FastQCFastQC Report
Wed 8 May 2024
EGAF00007962740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504203
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12880.25545266489886015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12250.24295769759402464No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9970.19773781591938167No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9970.19773781591938167No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9360.18563951424327108No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG8900.17651620478259747No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8630.17116121879481083No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7420.14716294825695206No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7140.14160962945480293No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7080.1404196325686281No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6390.12673466837761777No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6280.12455300741963059No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6260.12415634179090565No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6220.12336301053345577No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC5810.11523136514459455No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5350.10610805568392095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)