FastQCFastQC Report
Wed 8 May 2024
EGAF00007962741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504203
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29360.5823051429682092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24480.4855187295593243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13000.25783265867120986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9740.19317616118904488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9350.18544118142890859No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9180.18206952358474662No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG8520.16897955783682367No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8060.1598562483761501No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7750.15370793113091355No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7670.1521212686160138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7640.15152627017292639No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7070.14022129975426564No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6680.13248631999412935No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6680.13248631999412935No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6150.12197468083291849No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG5680.11265303855788245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5500.109083047899358No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5080.1007530696961343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)