FastQCFastQC Report
Wed 8 May 2024
EGAF00007962742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523458
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14290.2729922935555479No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12370.23631313304983398No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10980.20975894914205148No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10070.1923745553606975No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9510.18167646687986427No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9260.17690053452234944No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8680.16582037145291503No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7870.15034635061456697No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7680.1467166420228557No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7670.1465256047285551No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7400.14136759778243907No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7230.138119963779329No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7060.1348723297762189No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6400.12226386835237975No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6220.11882519705496908No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC5950.11366719010885305No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5410.10335117621662102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)