FastQCFastQC Report
Wed 8 May 2024
EGAF00007962743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523458
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG32790.6264112880116456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14560.27815030050166395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10060.1921835180663969No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9360.17881090746535538No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9260.17690053452234944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9130.17441704969644176No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8690.16601140874721562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8580.16390999850990912No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8400.16047132721249843No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8180.15626850673788537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7940.15168361167467115No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7620.14557041825705214No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6980.13334403142181417No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6520.12455631588398687No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6490.12398320400108509No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG6020.1150044511689572No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5870.1121388917544483No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5610.10717192210263288No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5590.10678984751403169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)