FastQCFastQC Report
Wed 8 May 2024
EGAF00007962744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508269
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13060.25695055177474924No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12040.23688243823644567No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10160.19989415053839601No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9980.19635271873751892No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9590.1886796165022852No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG8970.17648135141037521No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8880.17471063550993665No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7630.15011735911495686No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7480.14716616594755927No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7350.14460846520248138No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7050.13870607886768618No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6960.13693536296724765No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC6180.12158915849678024No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6110.12021193501866138No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5870.11549002595082525No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5680.11175184793878831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)