FastQCFastQC Report
Wed 8 May 2024
EGAF00007962745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508269
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30640.6028303909937454No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24550.4830119483974037No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13240.2604919835756263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9750.19182755588084263No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9440.18572842333488762No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9320.18336746880096957No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG8850.17412039687645717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8460.16644729464122346No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8080.15897093861714956No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7790.15326529849351425No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7450.14657592731407976No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7190.14146052582392393No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7070.13909957129000589No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG6290.12375336681953847No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6160.12119566607446057No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6120.12040868122982122No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5870.11549002595082525No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5220.10270152222543576No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5150.10132429874731687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)