FastQCFastQC Report
Wed 8 May 2024
EGAF00007962746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466909
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG11230.24051795960240646No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10390.22252730189394504No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7290.15613320796986138No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5900.12636295295228836No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5870.12572042946270046No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5780.12379285899393672No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5730.1227219865112902No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5640.1207944160425265No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4840.10366045632018231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)