FastQCFastQC Report
Wed 8 May 2024
EGAF00007962747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466909
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11920.2552959998629283No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11760.2518692079184595No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10280.22017138243212273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7490.1604166979004474No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7370.15784660394209576No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6750.14456778515727903No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5960.12764799993146414No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5740.12293616100781952No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5600.11993771805640926No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5520.11822432208417487No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4950.10601637578200464No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC4870.10430297980977021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)