FastQCFastQC Report
Wed 8 May 2024
EGAF00007962748

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962748
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453245
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10610.23408973071958875No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9140.20165694050678992No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7160.15797195777118334No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6360.14032145969619078No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5620.1239947489768227No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5360.11825833710245011No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5180.11428697503557679No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5090.11230129400214013No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4610.1017109951571446No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4590.10126973270526977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)