FastQCFastQC Report
Wed 8 May 2024
EGAF00007962749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453245
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22380.4937726836479167No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11360.25063707266489427No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11260.2484307604055202No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8910.1965824223102296No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7260.16017827003055743No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6600.14561660911868857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6420.14164524705181522No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6350.1401008284702534No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5450.12024401813588677No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5160.11384571258370196No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4730.10435856986839348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)