FastQCFastQC Report
Wed 8 May 2024
EGAF00007962750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468280
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10580.22593320235756387No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10180.21739130434782608No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7960.16998377039378149No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6980.149056120269924No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6190.13218587170069188No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5810.12407106859144103No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5630.12022721448705903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5490.11723755018365081No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5350.11424788588024258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)