FastQCFastQC Report
Wed 8 May 2024
EGAF00007962751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468280
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12020.25668403519261984No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11350.24237635602630905No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10150.21675066199709575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8110.17318698214743314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7310.15610318612795765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7050.15055095242162808No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6910.14756128811821986No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6120.13069103954898778No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6020.12855556504655336No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5560.11873238233535491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5290.11296660117878193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)