FastQCFastQC Report
Wed 8 May 2024
EGAF00007962752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457555
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG10420.227732185201779No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10170.22226836118062313No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7920.17309394499021974No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6330.13834402421566808No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5890.12872769393843364No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5590.12217110511304652No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5400.11801859885696801No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5300.11583306924850564No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5130.11211766891411962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)