FastQCFastQC Report
Wed 8 May 2024
EGAF00007962753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457555
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21810.47666400760564304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11580.2530843286599425No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC11200.2447793161477855No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9920.21680453715946715No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7890.17243828610768103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6850.1497087781796724No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6500.1420594245500541No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6240.13637704756805194No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5870.12829058801674115No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5400.11801859885696801No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5040.11015069226650348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)