FastQCFastQC Report
Wed 8 May 2024
EGAF00007962754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500402
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10190.20363627643374727No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8780.17545893101946036No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8150.16286905328116194No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6840.13669010115866842No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6800.13589074384195107No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5620.11230970299878898No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG5560.11111066702371294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)