FastQCFastQC Report
Wed 8 May 2024
EGAF00007962755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500402
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10310.20603434838389934No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9220.1842518615033513No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8770.17525909169028103No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7600.15187789017629827No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7030.14048704841307588No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6830.1364902618294891No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG5780.11550713226565841No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5780.11550713226565841No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5560.11111066702371294No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5400.10791323775684351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)