FastQCFastQC Report
Wed 8 May 2024
EGAF00007962756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484673
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9910.20446775454791166No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8390.1731064036989888No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7260.1497917152389343No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6160.12709600080879271No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6130.1264770267788798No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG5210.10749515652821594No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5040.10398763702537588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)