FastQCFastQC Report
Wed 8 May 2024
EGAF00007962757

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962757
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484673
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23230.47929222382926223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9990.2061183519610129No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8440.17413802708217707No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7710.15907632568762856No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7100.1464905204127319No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6890.14215770220334123No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6150.12688967613215507No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5550.11451019553389605No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG5190.10708250717494064No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5090.10501926040856413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)