FastQCFastQC Report
Wed 8 May 2024
EGAF00007962758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502699
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10430.20748002283672734No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9560.19017344375063408No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7860.15635599036401504No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6750.13427518256451673No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6440.12810847047636856No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG5820.11577504630007221No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5120.10185021255264085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)