FastQCFastQC Report
Wed 8 May 2024
EGAF00007962759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502699
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10610.2110606943717811No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT10000.19892619639187664No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8140.1619259238629876No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7530.14979142588308314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7480.14879679490112374No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6650.13228592060059796No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG6220.12373209415574726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5950.11836108685316661No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG5310.1056298102840865No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5090.1012534339634652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)