FastQCFastQC Report
Wed 8 May 2024
EGAF00007962760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489720
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10490.21420403495875195No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8380.17111818998611453No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7800.15927468757657437No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6670.13620027770971166No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6430.13129951809197093No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG5310.10842930654251408No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5110.10434534019439681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)