FastQCFastQC Report
Wed 8 May 2024
EGAF00007962761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489720
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23550.480887037490811No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10390.21216205178469333No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8720.1780609327779139No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8020.16376705055950339No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7340.1498815649759046No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6960.14212202891448175No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6380.1302785265049416No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG5600.11435105774728416No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG5360.1094502981295434No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4910.1002613738462795No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT4900.10005717552887365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)