FastQCFastQC Report
Wed 8 May 2024
EGAF00007962762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478802
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18050.37698255228674904No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15710.3281105759792148No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12180.25438490231870375No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCT10360.21637336519062159No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6890.14390081912773967No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6750.1409768547332718No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6740.14076800013366694No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5730.11967368557357738No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5720.11946483097397254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)