FastQCFastQC Report
Wed 8 May 2024
EGAF00007962763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478802
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37600.7852932945142251No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12000.2506255195258165No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGATG10630.22201243937995246No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7080.14786905652023175No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7000.14619821972339297No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT6360.13283152534868276No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5820.121553376970021No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5590.11674972117910953No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5580.11654086657950469No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4800.1002502078103266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)