FastQCFastQC Report
Wed 8 May 2024
EGAF00007962764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464689
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16910.3638992960883516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14840.319353373977004No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11570.24898372890255635No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCT9600.20658978370480038No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6560.1411696855316136No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6430.13837211554394444No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6360.13686573170443028No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5820.12524505637103525No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5350.11513076487715439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)