FastQCFastQC Report
Wed 8 May 2024
EGAF00007962765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464689
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37840.8143080641030883No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22260.479030060965506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11610.24984451966799298No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGATG9690.20852656292703292No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6660.1433216624452053No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6480.13944810400074026No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5860.1261058471364719No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5780.12438426560559858No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5410.1164219510253094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)