FastQCFastQC Report
Wed 8 May 2024
EGAF00007962766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480057
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17740.36953945052358367No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15350.3197536959152767No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12600.26246883182622066No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCT9730.20268426457691482No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7420.1545649787421077No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7000.1458160176812337No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6830.14227477153754658No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5890.12269376344892378No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5850.12186052906217387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)