FastQCFastQC Report
Wed 8 May 2024
EGAF00007962767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480057
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG40710.8480242971147176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12460.25955251147259595No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGATG9660.2012261044001025No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7430.1547732873387952No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7120.14831572084148342No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT6610.1376919824104221No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5990.12477684941579854No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5680.11831928291848677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5080.10582076711723816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5030.10477922413380078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)