FastQCFastQC Report
Wed 8 May 2024
EGAF00007962768

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962768
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468586
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16820.3589522520945995No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15250.3254471964591345No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11840.2526750692508952No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCT9470.2020973738011806No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT7170.15301353433521275No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6370.13594089452096308No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6150.1312459185720444No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5590.11929507070206963No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5360.11438668675547285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)