FastQCFastQC Report
Wed 8 May 2024
EGAF00007962769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468586
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38700.8258889510143282No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21700.4630953549615225No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11860.2531018852462515No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGATG9680.2065789417524211No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6770.14447721442808792No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT6610.14106268646523798No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6310.13466044653489434No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5640.12036211069046024No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5300.11310623876940414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)