FastQCFastQC Report
Wed 8 May 2024
EGAF00007962770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468404
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCC8620.1840291713990487No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6730.14367938787883963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6410.13684767849975663No Hit
ATAGTCGAAAACATTTACACGTTCCGGGTGCAGAGCGCGAC6270.13385880564640779No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6210.13257786013782974No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6180.1319373873835407No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6060.12937549636638457No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC5340.11400415026344779No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5160.1101613137377136No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5120.10930735006532823No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5080.10845338639294283No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5060.10802640455675017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)