FastQCFastQC Report
Wed 8 May 2024
EGAF00007962771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468404
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13700.2924825577919915No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9020.19256880812290245No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCGTT8640.18445615323524137No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6750.14410636971503232No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6270.13385880564640779No Hit
CGTTCTCCGCCAGAACCGTCCGGTGACGGTGGT6260.13364531472831145No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC6120.13065644187496264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5590.11934142321585639No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5520.117846986789182No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5390.11507160485392952No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA5370.11464462301773683No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5320.1135771684272551No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5310.11336367750915877No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5190.11080178649200262No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4990.10653196813007575No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC4780.10204865885005251No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4720.10076771334147445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)