FastQCFastQC Report
Wed 8 May 2024
EGAF00007962772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456271
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCC8610.1887036432295719No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6950.15232175614930601No Hit
ATAGTCGAAAACATTTACACGTTCCGGGTGCAGAGCGCGAC6610.14487004433768527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6380.13982918046511833No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6140.13456914859809194No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6130.13434998060363249No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5770.1264599328030929No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5230.11462486110228351No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC5230.11462486110228351No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC4990.10936482923525712No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4780.10476230135160902No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG4780.10476230135160902No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4640.10169394942917695No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACG4570.10015977346796094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)