FastQCFastQC Report
Wed 8 May 2024
EGAF00007962773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456271
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22180.4861146117110226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14370.3149444080382054No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8820.19330617111322002No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCGTT8200.17971775545673516No Hit
CGTTCTCCGCCAGAACCGTCCGGTGACGGTGGT6590.14443170834876642No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6440.1411441884318749No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5910.12952828472552497No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5860.1284324447532278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5350.1172548770357967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5240.11484402909674296No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC5240.11484402909674296No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA5200.11396735711890521No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5140.11265234915214863No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA4710.10322812539039299No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4690.10278978940147412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)