FastQCFastQC Report
Wed 8 May 2024
EGAF00007962774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469757
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCC9190.1956330613487399No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7060.1502904693277588No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6700.1426269326481564No Hit
ATAGTCGAAAACATTTACACGTTCCGGGTGCAGAGCGCGAC6460.1375179081950881No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6430.13687928013845457No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6030.12836423938334074No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5940.12644835521344014No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5300.11282429000525804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5290.11261141398638018No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5130.10920539768433465No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC5110.10877964564657897No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC5060.10771526555218974No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACG4970.10579938138228914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4780.10175473702361008No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG4740.10090323294809869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)