FastQCFastQC Report
Wed 8 May 2024
EGAF00007962775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469757
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15890.33825999399689627No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCGTT9040.1924399210655722No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8950.1905240368956716No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6700.1426269326481564No Hit
CGTTCTCCGCCAGAACCGTCCGGTGACGGTGGT6490.13815653625172164No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5900.12559685113792876No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5860.12474534706241737No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5730.12197795881700539No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5680.12091357872261617No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11963632260934909No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5350.11388867009964726No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA5210.11090840583535744No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC5170.11005690175984605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5000.10643800943892269No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4890.10409637323126639No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTGAA4830.1028191171179993No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA4820.10260624109912148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)