FastQCFastQC Report
Wed 8 May 2024
EGAF00007962776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459096
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCC8550.1862355585759841No Hit
ATAGTCGAAAACATTTACACGTTCCGGGTGCAGAGCGCGAC7020.15290919546238696No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6420.13984003345705473No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6420.13984003345705473No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6020.13112725878683326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5750.12524613588443376No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5730.12481049715092268No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5230.11391952881314583No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCC5140.11195915451234602No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5030.1095631414780351No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4970.10825622527750188No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACG4930.10738494781047973No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC4680.10193946364159132No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG4650.10128600554132469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)