FastQCFastQC Report
Wed 8 May 2024
EGAF00007962777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459096
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21830.4754996776273372No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14460.3149668043285065No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8280.1803544356735846No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCGTT8230.17926533883980694No Hit
CGTTCTCCGCCAGAACCGTCCGGTGACGGTGGT6930.15094882116158712No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6580.14332514332514332No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5840.1272065101852336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5690.12393921968390054No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5650.12306794221687838No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5540.12067192918256747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5250.1143551675466569No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCGTA4990.10869186401101295No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC4960.10803840591074633No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA4760.1036820185756356No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4740.10324637984212454No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTGAA4720.10281074110861345No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4600.100196908707547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)