FastQCFastQC Report
Wed 8 May 2024
EGAF00007962786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473512
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG8690.18352227609859942No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7160.151210528983426No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5850.123544915440369No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5020.10601632060011151No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4990.10538275693118655No Hit
ACGGCACCATTCGGAGATGTCTGCCAGCTGCTGGCAGCAAT4860.102637314365845No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC4850.10242612647620335No Hit
CGCCAGCTGCTGGCAACAATCACGCAGCACAGCTTCTGGAA4740.10010305969014512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)