FastQCFastQC Report
Wed 8 May 2024
EGAF00007962787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473512
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9080.191758603794624No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT8950.18901316122928247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7040.1486762743077261No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6590.13917281927385156No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.11551977563398605No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5420.11446383618577775No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5290.11171839362043622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5200.10981770261366132No Hit
ATGTCTGGCCCGTGGATGTGTTACCCGGGTCAG5080.10728344793796145No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5040.10643869637939482No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4990.10538275693118655No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4920.10390444170369495No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC4810.10158137491763672No Hit
CGTGTCGACGCATGGAGCGTAAACTCTGGTCCG4800.10137018702799507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)