FastQCFastQC Report
Wed 8 May 2024
EGAF00007962788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461671
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG8170.17696584797399015No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7250.15703823718622134No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5320.11523357542492381No Hit
CGCCAGCTGCTGGCAACAATCACGCAGCACAGCTTCTGGAA5050.10938525486764385No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC4980.10786902361205274No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4710.10202070305477277No Hit
ACGGCACCATTCGGAGATGTCTGCCAGCTGCTGGCAGCAAT4700.10180409858968832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)