FastQCFastQC Report
Wed 8 May 2024
EGAF00007962789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461671
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23280.5042551947165839No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9470.20512442843496778No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT8320.1802149149502568No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7000.15162312555911028No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5880.12736342546965262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5340.11566678435509269No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5320.11523357542492381No Hit
CGTGTCGACGCATGGAGCGTAAACTCTGGTCCG5050.10938525486764385No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC4990.10808562807713719No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT4980.10786902361205274No Hit
ATGTCTGGCCCGTGGATGTGTTACCCGGGTCAG4830.10461995663578608No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4690.1015874941246039No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4680.10137088965951944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)