FastQCFastQC Report
Wed 8 May 2024
EGAF00007962790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475296
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG8190.17231367400525147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7010.1474870396552885No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC6000.12623712381337104No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5070.10667036962229853No Hit
ACGGCACCATTCGGAGATGTCTGCCAGCTGCTGGCAGCAAT4890.1028832559078974No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4870.10246246549518616No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4760.10014811822527435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)