FastQCFastQC Report
Wed 8 May 2024
EGAF00007962791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475296
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9580.20155860768868245No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT8480.1784151349895644No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6910.14538308759173232No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC5980.1258163334006598No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5790.12181882447990305No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5600.11782131555914631No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5450.11466538746381202No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5340.11235104019390021No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5330.11214064498754461No Hit
ATGTCTGGCCCGTGGATGTGTTACCCGGGTCAG5250.11045748333669966No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5150.10835353127314348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4970.10456641755874235No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4900.103093651114253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)