FastQCFastQC Report
Wed 8 May 2024
EGAF00007962792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465127
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG8300.17844588682230875No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7330.15759136751897868No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5480.11781728431159663No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTAC5050.10857249740393485No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT5010.10771251722647793No Hit
CGCCAGCTGCTGGCAACAATCACGCAGCACAGCTTCTGGAA4920.10577756182719988No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4880.10491758164974296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)