FastQCFastQC Report
Wed 8 May 2024
EGAF00007962793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465127
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21870.4701941620245654No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9110.19586048541581114No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT8660.18618570841942092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7200.15479643194224374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5970.12835204148544377No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5280.11351738342431207No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGGCC5170.11115243793630558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5120.11007746271448444No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5030.10814250731520639No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4870.10470258660537875No Hit
CGTGTCGACGCATGGAGCGTAAACTCTGGTCCG4860.10448759156101452No Hit
ATGTCTGGCCCGTGGATGTGTTACCCGGGTCAG4830.10384260642792183No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4750.10212264607300803No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4730.10169265598427957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)