FastQCFastQC Report
Wed 8 May 2024
EGAF00007962794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464916
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13060.28091096025948775No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10610.22821326863347358No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9840.21165113697958338No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8450.18175326295502842No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6680.1436818694129692No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6060.13034612704230442No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5170.11120288396183396No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA4670.10044825301774944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)