FastQCFastQC Report
Wed 8 May 2024
EGAF00007962795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464916
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13190.2837071643049497No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC10630.22864345387123694No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC10490.2256321572068933No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9350.20111159865438058No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8730.18777585628371576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8220.17680613272074955No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8080.1737948360564059No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7070.15207048154935515No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6270.13486307203881992No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC6030.12970084918565936No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5900.12690464514019736No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5730.12324807061920863No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5440.1170103846716396No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5210.11206325443736073No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5040.10840667991637198No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4980.10711612420308185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)