FastQCFastQC Report
Wed 8 May 2024
EGAF00007962796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451357
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12570.27849352064995114No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG9900.21933857234960352No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9300.20604532554053664No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8120.17990194014937178No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6700.14844125603458017No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5910.13093848106930878No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5340.11830989660069524No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5050.11188482730964625No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4580.1014717839758772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)