FastQCFastQC Report
Wed 8 May 2024
EGAF00007962797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451357
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23150.5128977727164972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12440.2756133171746533No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC9920.2197816805765724No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9800.21712303121475904No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8570.18987187525617194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT8170.18100971071679403No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7810.1730337626313539No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7700.17059666738302495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7590.16815957213469604No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6240.13824976681429554No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5940.13160314340976212No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5880.13027381872885543No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC5640.12495652000522868No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5510.12207631652993084No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5320.11786678837372636No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4830.10701063681298839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)